Installation

You can install DAMUTA using pip from PyPI or directly from GitHub.

From PyPI

To install the latest stable version from PyPI, run:

pip install damuta

From GitHub

To install the latest development version from GitHub, run:

pip install git+https://github.com/morrislab/damuta.git

Requirements

DAMUTA requires Python 3.8 or later. The main dependencies are:

  • NumPy

  • Pandas

  • PyMC3

  • Theano

  • Scikit-learn

theanorc

To use the GPU, ~/.theanorc should contain the following:

[global]
floatX = float64
device = cuda

Otherwise, device will default to CPU. If complilation is slow you can increase the timeout with:

[global]
config.compile.timeout = 1000